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Workshop
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Understanding Protein-DNA Interactions by Paying Attention to Protein and Genomics Foundation Models
Dhruva Rajwade · Erica Wang · Aryan Satpathy · Alexander Brace · Hongyu Guo · Arvind Ramanathan · Shengchao Liu · Animashree Anandkumar
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Workshop
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Understanding Task Knowledge Entanglement in Protein Language Model Representations
Ria Vinod
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Workshop
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Protein Sequence Domain Annotation using Language Models
Arpan Sarkar · Kumaresh Krishnan · Sean Eddy
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Workshop
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Benchmarking text-integrated protein language model embeddings and embedding fusion on diverse downstream tasks
Young Su Ko
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Workshop
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Research Journey of Generative Protein Modeling
Xinhui Chen · Yiwen Yuan · Joseph Liu · Chak Tou Leong · Zhen Xie · Xiaoye Zhu · Ying Chen · Songyue Chen · Chenyi Wang · Kun Li · Jie Zhang · Zuchao Li · Jiaqi Chen
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Workshop
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Generative Models in Protein Engineering: A Comprehensive Survey
Xinhui Chen · Yiwen Yuan · Joseph Liu · Chak Tou Leong · Xiaoye Zhu · Jiaqi Chen
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Workshop
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PLMFit: Benchmarking Transfer Learning with Protein Language Models for Protein Engineering
Thomas Bikias · Evangelos Stamkopoulos · Sai Reddy
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Workshop
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PQA: Zero-shot Protein Question Answering for Free-form Scientific Enquiry with Large Language Models
Eli Carrami · Sahand Sharifzadeh
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Workshop
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Sun 13:30
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Milot Mirdita: Challenges to metagenomic annotation with Foldseek and protein language models
Milot Mirdita
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Workshop
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A Safety-aware Framework for Generative Enzyme Design with Foundation Models
Xiaoyi Fu · Tao Han · Yuan Yao · Song Guo
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Poster
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Wed 16:30
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ProtGO: Function-Guided Protein Modeling for Unified Representation Learning
Bozhen Hu · Cheng Tan · Yongjie Xu · Zhangyang Gao · Jun Xia · Lirong Wu · Stan Z. Li
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Workshop
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Loop-Diffusion: an equivariant diffusion model for designing and scoring protein loops
Kevin Borisiak · Gian Marco Visani · Armita Nourmohammad
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