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14 Results
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Workshop
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Understanding Protein-DNA Interactions by Paying Attention to Protein and Genomics Foundation Models Dhruva Rajwade · Erica Wang · Aryan Satpathy · Alexander Brace · Hongyu Guo · Arvind Ramanathan · Shengchao Liu · Animashree Anandkumar |
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Workshop
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Understanding Protein-DNA Interactions by Paying Attention to Protein and Genomics Foundation Models Dhruva Rajwade · Erica Wang · Aryan Satpathy · Alexander Brace · Hongyu Guo · Arvind Ramanathan · Shengchao Liu · Animashree Anandkumar |
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Workshop
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MSA-LM: Integrating DNA-level Inductive Biases into DNA Language Models Vishrut Thoutam |
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Workshop
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Understanding Protein-DNA Interactions by Paying Attention to Protein and Genomics Foundation Models Dhruva Rajwade · Erica Wang · Aryan Satpathy · Alexander Brace · Hongyu Guo · Arvind Ramanathan · Shengchao Liu · Animashree Anandkumar |
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Affinity Event
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Tue 14:30 |
Luca Pinello: DNA-Diffusion: Leveraging Generative Models for Controlling Chromatin Accessibility and Gene Expression via Synthetic Regulatory Elements Luca Pinello |
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Workshop
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Accurate and General DNA Representations Emerge from Genome Foundation Models at Scale Caleb Ellington · Ning Sun · Nicholas Ho · Tianhua Tao · Sazan Mahbub · Yonghao Zhuang · Hongyi Wang · Eric Xing · Le Song |
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Workshop
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Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design Chenyu Wang · Masatoshi Uehara · Yichun He · Amy Wang · Tommaso Biancalani · Avantika Lal · Tommi Jaakkola · Sergey Levine · Hanchen Wang · Aviv Regev |
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Workshop
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Fine-Tuning Discrete Diffusion Models via Reward Optimization: Applications to DNA and Protein Design Chenyu Wang · Masatoshi Uehara · Yichun He · Amy Wang · Tommaso Biancalani · Avantika Lal · Tommi Jaakkola · Sergey Levine · Hanchen Wang · Aviv Regev |
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Workshop
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Simple and Effective Masked Diffusion Language Models Subham Sahoo · Marianne Arriola · Aaron Gokaslan · Yair Schiff · Edgar Marroquin · Justin Chiu · Alexander Rush · Volodymyr Kuleshov |
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Workshop
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Bio-xLSTM: Generative modeling, representation and in-context learning of biological and chemical sequences Niklas Schmidinger · Lisa Schneckenreiter · Philipp Seidl · Johannes Schimunek · Sohvi Luukkonen · Pieter-Jan Hoedt · Johannes Brandstetter · Andreas Mayr · Sepp Hochreiter · Günter Klambauer |
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Poster
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Wed 11:00 |
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Aman Patel · Arpita Singhal · Austin Wang · Anusri Pampari · Maya Kasowski · Anshul Kundaje |
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Poster
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Fri 16:30 |
Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA Lifeng Qiao · Peng Ye · Yuchen Ren · Weiqiang Bai · Chaoqi Liang · Xinzhu Ma · Nanqing Dong · Wanli Ouyang |