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Poster
Fri 16:30 FlexSBDD: Structure-Based Drug Design with Flexible Protein Modeling
ZAIXI ZHANG · Mengdi Wang · Qi Liu
Workshop
Does Structural Information Improve ESM3 for Protein Binding Affinity Prediction?
Thomas Loux · Dianzhuo Wang
Workshop
ProtComposer: Compositional Protein Structure Generation with 3D Ellipsoids
Hannes Stärk · Bowen Jing · Tomas Geffner · Jason Yim · Tommi Jaakkola · Arash Vahdat · Karsten Kreis
Poster
Thu 11:00 MSAGPT: Neural Prompting Protein Structure Prediction via MSA Generative Pre-Training
Bo Chen · Zhilei Bei · Xingyi Cheng · Pan Li · Jie Tang · Le Song
Workshop
Learning the Language of Protein Structures
Jeremie DONA · Benoit Gaujac · Thomas Barrett · Timothy Atkinson · Liviu Copoiu · Thomas PIERROT
Workshop
Generative Models in Protein Engineering: A Comprehensive Survey
Xinhui Chen · Yiwen Yuan · Joseph Liu · Chak Tou Leong · Xiaoye Zhu · Jiaqi Chen
Workshop
Balancing Locality and Reconstruction in Protein Structure Tokenizer
Jiayou Zhang · Barthélémy Meynard · Jing Gong · Xingyi Cheng · Eric Xing · Le Song
Workshop
Distilling Structural Representations into Protein Sequence Models
Jeffrey Ouyang-Zhang · Chengyue Gong · Yue Zhao · Philipp Kraehenbuehl · Adam Klivans · Daniel Diaz
Workshop
Retrieval Augmented Protein Language Models for Protein Structure Prediction
Peter Lee · Xingyi Cheng · Eric Xing · lee song
Workshop
EmbedSimScore: Advancing Protein Similarity Analysis with Structural and Contextual Embeddings
Gourab Saha · Toki Tahmid · Md. Shamsuzzoha Bayzid
Workshop
Structure Language Models for Protein Conformation Generation
Jiarui Lu · Xiaoyin Chen · Stephen Lu · Chence Shi · Hongyu Guo · Yoshua Bengio · Jian Tang
Workshop
Estimating protein flexibility via uncertainty quantification of structure prediction models
Charlotte Sweeney · Nele Quast · Fabian Spoendlin · Yee Whye Teh