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113 Results
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Workshop
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Understanding Protein-DNA Interactions by Paying Attention to Protein and Genomics Foundation Models Dhruva Rajwade · Erica Wang · Aryan Satpathy · Alexander Brace · Hongyu Guo · Arvind Ramanathan · Shengchao Liu · Animashree Anandkumar |
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Poster
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DePLM: Denoising Protein Language Models for Property Optimization Zeyuan Wang · Keyan Ding · Ming Qin · Xiaotong Li · Xiang Zhuang · Yu Zhao · Jianhua Yao · Qiang Zhang · Huajun Chen |
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Poster
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Enhancing Protein Mutation Effect Prediction through a Retrieval-Augmented Framework Ruihan Guo · Rui Wang · Ruidong Wu · Zhizhou Ren · Jiahan Li · Shitong Luo · Zuofan Wu · Qiang Liu · Jian Peng · Jianzhu Ma |
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Poster
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Wed 16:30 |
Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Generation Guillaume Huguet · James Vuckovic · Kilian FATRAS · Eric Thibodeau-Laufer · Pablo Lemos · Riashat Islam · Chenghao Liu · Jarrid Rector-Brooks · Tara Akhound-Sadegh · Michael Bronstein · Alexander Tong · Joey Bose |
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Poster
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Fri 11:00 |
Learning Complete Protein Representation by Dynamically Coupling of Sequence and Structure Bozhen Hu · Cheng Tan · Jun Xia · Yue Liu · Lirong Wu · Jiangbin Zheng · Yongjie Xu · Yufei Huang · Stan Z. Li |
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Workshop
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ProteinZen: combining latent and SE(3) flow matching for all-atom protein generation Alex Li · Tanja Kortemme |
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Poster
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Wed 16:30 |
ProtGO: Function-Guided Protein Modeling for Unified Representation Learning Bozhen Hu · Cheng Tan · Yongjie Xu · Zhangyang Gao · Jun Xia · Lirong Wu · Stan Z. Li |
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Poster
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Thu 11:00 |
MSAGPT: Neural Prompting Protein Structure Prediction via MSA Generative Pre-Training Bo Chen · Zhilei Bei · Xingyi Cheng · Pan Li · Jie Tang · Le Song |
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Workshop
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AptaBLE: An Enhanced Deep Learning Platform for Aptamer Protein Interaction Prediction and Design Sawan Patel · Sherwood Yao · Zhangzhi Peng · Keith Fraser · Pranam Chatterjee · Adam Friedman · Owen Yao |
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Poster
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Wed 16:30 |
ProSST: Protein Language Modeling with Quantized Structure and Disentangled Attention Mingchen Li · Yang Tan · Xinzhu Ma · Bozitao Zhong · Huiqun Yu · Ziyi Zhou · Wanli Ouyang · Bingxin Zhou · Pan Tan · Liang Hong |
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Poster
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Wed 11:00 |
Kermut: Composite kernel regression for protein variant effects Peter Mørch Groth · Mads Kerrn · Lars Olsen · Jesper Salomon · Wouter Boomsma |
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Poster
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Thu 16:30 |
Ultrafast classical phylogenetic method beats large protein language models on variant effect prediction Sebastian Prillo · Wilson Wu · Yun Song |