Abstract: Diffusion Transformer (DiT) is emerging as a cutting-edge trend in the landscape of generative diffusion models for image generation. Recently, masked-reconstruction strategies have been considered to improve the efficiency and semantic consistency in training DiT but suffer from deficiency in contextual information extraction. In this paper, we provide a new insight to reveal that noisy-to-noisy masked-reconstruction harms sufficient utilization of contextual information. We further demonstrate the insight with theoretical analysis and empirical study on the mutual information between unmasked and masked patches. Guided by such insight, we propose a novel training paradigm named MC-DiT for fully learning contextual information via diffusion denoising at different noise variances with clean-to-clean mask-reconstruction. Moreover, to avoid model collapse, we design two complementary branches of DiT decoders for enhancing the use of noisy patches and mitigating excessive reliance on clean patches in reconstruction. Extensive experimental results on 256$\times$256 and 512$\times$512 image generation on the ImageNet dataset demonstrate that the proposed MC-DiT achieves state-of-the-art performance in unconditional and conditional image generation with enhanced convergence speed.