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Workshop

Deep Generative Models for Health

Emanuele Palumbo ⋅ Laura Manduchi ⋅ Sonia Laguna ⋅ Melanie F. Pradier ⋅ Vincent Fortuin ⋅ Stephan Mandt ⋅ Julia Vogt
Project Page

Abstract

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Schedule

Timezone: America/Los_Angeles
6:30 AM
Opening Remarks
8:00 AM
Break
8:15 AM
Best Paper Award: Protein Inpainting Co-Design with ProtFill
Elizaveta Kozlova ⋅ Arthur Valentin ⋅ Daniel Nakhaee-Zadeh Gutierrez
8:30 AM
Spotlight: Hierarchical Protein Representation for Interface Co-design with HICON
Aous Khadhraoui ⋅ Daniel Nakhaee-Zadeh Gutierrez ⋅ Elizaveta Kozlova
10:30 AM
Lunch
12:20 PM
Panel Discussion
1:10 PM
Break
1:25 PM
Spotlight: Generative Time Series Models with Interpretable Latent Processes for Complex Disease Trajectories
Cécile Trottet ⋅ Manuel Schürch ⋅ Maolaaisha Aminanmu ⋅ Ahmed Allam ⋅ Michael Krauthammer
1:40 PM
Spotlight: Synthetic Sleep EEG Signal Generation using Latent Diffusion Models
Bruno Aristimunha ⋅ Raphael Yokoingawa de Camargo ⋅ Sylvain Chevallier ⋅ Oeslle Lucena ⋅ Adam Thomas ⋅ M. Jorge Cardoso ⋅ Walter Lopez Pinaya ⋅ Jessica Dafflon
2:10 PM
Spotlight: Counterfactual Generative Models for Time-Varying Treatments
Shenghao Wu ⋅ Wenbin Zhou ⋅ Minshuo Chen ⋅ Shixiang Zhu
2:10 PM
Spotlight: Prot2Text: Multimodal Protein’s Function Generation with GNNs and Transformers
Hadi Abdine ⋅ Michail Chatzianastasis ⋅ Costas Bouyioukos ⋅ Michalis Vazirgiannis
2:25 PM
Closing remarks
Lesion in-and-out painting for medical image augmentation
Yisak Kim ⋅ Kyungmin Jeon ⋅ Soyeon Kim ⋅ Chang Min Park
Adversarial Fine-tuning using Generated Respiratory Sound to Address Class Imbalance
June-Woo Kim ⋅ Chihyeon Yoon ⋅ Miika Toikkanen ⋅ Sangmin Bae ⋅ Ho-Young Jung
fcVI: Flow Cytometry Variational Inference
Kemal Inecik ⋅ Adil Meric ⋅ Fabian Theis
Semantic Map Guided Synthesis of Wireless Capsule Endoscopy Images using Diffusion Models
Haejin Lee ⋅ Jeongwoo Ju ⋅ Jonghyuck Lee ⋅ Yeoun Joo Lee ⋅ Heechul Jung
Federated learning for causal inference using deep generative disentangled models
Alejandro Almodóvar ⋅ Juan Parras ⋅ Santiago Zazo
CHIRon: A Generative Foundation Model for Structured Sequential Medical Data
Brian Hill ⋅ Melika Emami ⋅ Vijay Nori ⋅ Aldo Cordova-Palomera ⋅ Robert Tillman ⋅ Eran Halperin
Automated clinical coding using off-the-shelf large language models
Joseph Boyle ⋅ Antanas Kascenas ⋅ Pat Lok ⋅ Maria Liakata ⋅ Alison O'Neil
DySurv: Dynamic Deep Learning Model for Survival Prediction in the ICU
Munib Mesinovic ⋅ Peter Watkinson ⋅ Tingting Zhu
Semi-Supervised Diffusion Model for Brain Age Prediction
Ayodeji Ijishakin ⋅ Sophie Martin ⋅ Florence Townend ⋅ James Cole
Closing Gaps: An Imputation Analysis of ICU Vital Signs
Robin van de Water ⋅ Bert Arnrich
Uncovering the latent dynamics of whole-brain fMRI tasks with a sequential variational autoencoder
Eloy Geenjaar ⋅ Donghyun Kim ⋅ Riyasat Ohib ⋅ Marlena Duda ⋅ Amrit Kashyap ⋅ Sergey Plis ⋅ Vince Calhoun
Generative Multimodal Decoding: Reconstructing Images and Text from Human fMRI
Matteo Ferrante ⋅ Tommaso Boccato ⋅ Furkan Ozcelik ⋅ Rufin VanRullen ⋅ Nicola Toschi
Texture synthesis for realistic-looking virtual colonoscopy using mask-aware transformer
Seunghyun Jang ⋅ Yisak Kim ⋅ Dongheon Lee ⋅ Chang Min Park
DDxT: Deep Generative Transformer Models for Differential Diagnosis
Mohammad Mahmudul Alam ⋅ Edward Raff ⋅ Tim Oates ⋅ Cynthia Matuszek
Large Language Models with Retrieval-Augmented Generation for Zero-Shot Disease Phenotyping
Will Thompson ⋅ David Vidmar ⋅ Jessica De Freitas ⋅ Gabriel Altay ⋅ Kabir Manghnani ⋅ Andrew Nelsen ⋅ Kellie Morland ⋅ John Pfeifer ⋅ Brandon Fornwalt ⋅ RuiJun Chen ⋅ Martin Stumpe ⋅ Riccardo Miotto
JoLT: Jointly Learned Representations of Language and Time-Series
Yifu Cai ⋅ Mononito Goswami ⋅ Arjun Choudhry ⋅ Arvind Srinivasan ⋅ Artur Dubrawski
A 3D Conditional Diffusion Model for Image Quality Transfer - An Application to Low-Field MRI
Seunghoi Kim ⋅ Daniel Alexander ⋅ Ahmed Karam Eldaly ⋅ Matteo Figini
The Negative Impact of Denoising on Automated Classification of Electrocardiograms
Federica Granese ⋅ Ahmad Fall ⋅ Alex Lence ⋅ Joe-Elie Salem ⋅ Jean-Daniel Zucker ⋅ Edi Prifti
Generating Personalized Insulin Treatments Strategies with Conditional Generative Time Series Models
Manuel Schürch ⋅ Xiang Li ⋅ Ahmed Allam ⋅ Giulia Hofer ⋅ Maolaaisha Aminanmu ⋅ Claudia Cavelti-Weder ⋅ Michael Krauthammer
LC-SD: Realistic Endoscopic Image Generation with Limited Training Data
Joanna Kaleta ⋅ Diego Dall'alba ⋅ Szymon Plotka ⋅ Przemyslaw Korzeniowski
DiffRNAFold: Generating RNA Tertiary Structures with Latent Space Diffusion
Mihir Bafna ⋅ Vikranth Keerthipati ⋅ Subhash Kanaparthi ⋅ Ruochi Zhang
Robust semi-supervised segmentation with timestep ensembling diffusion models
Margherita Rosnati ⋅ Mélanie Roschewitz ⋅ Ben Glocker
ECG Inpainting with denoising diffusion prior
Lisa Bedin ⋅ Gabriel Cardoso ⋅ Remi Dubois ⋅ Eric Moulines
Are we going MAD? Benchmarking Multi-Agent Debate between Language Models for Medical Q&A
Andries Smit ⋅ Paul Duckworth ⋅ Nathan Grinsztajn ⋅ Kale-ab Tessera ⋅ Tom Barrett ⋅ Arnu Pretorius
JMedLoRA:Medical Domain Adaptation on Japanese Large Language Models using Instruction-tuning
Issey Sukeda ⋅ Masahiro Suzuki ⋅ Hiroki Sakaji ⋅ satoshi kodera
Generative models for wearables data
Arinbjörn Kolbeinsson ⋅ Luca Foschini
Synthetic Data: Can We Trust Statistical Estimators?
Alexander Decruyenaere ⋅ Paloma Rabaey ⋅ Christiaan Polet ⋅ Johan Decruyenaere ⋅ Stijn Vansteelandt ⋅ Thomas Demeester ⋅ Heidelinde Dehaene
Multi-V-Stain: Multiplexed Virtual Staining of Histopathology Whole-Slide Images
Sonali Andani ⋅ Boqi Chen ⋅ Joanna Ficek-Pascual ⋅ Simon Heinke ⋅ Ruben Casanova ⋅ Bettina Sobottka ⋅ Bernd Bodenmiller ⋅ Viktor H Koelzer ⋅ Gunnar Rätsch
MEDiC: Mitigating EEG Data Scarcity Via Class-Conditioned Diffusion Model
Gulshan Sharma ⋅ Abhinav Dhall ⋅ Ramanathan Subramanian