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Workshop
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Unexplored regions of the protein sequence-structure map revealed at scale by a library of “foldtuned” language models
Arjuna Subramanian · Matt Thomson
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Workshop
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Towards Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
Alex Morehead · Jeffrey Ruffolo · Aadyot Bhatnagar · Ali Madani
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Poster
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Tue 8:45
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Pre-Training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction
Zuobai Zhang · Minghao Xu · Aurelie Lozano · Vijil Chenthamarakshan · Payel Das · Jian Tang
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Workshop
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Frame2seq: structure-conditioned masked language modeling for protein sequence design
Deniz Akpinaroglu · Kosuke Seki · Eleanor Zhu · Tanja Kortemme
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Poster
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Thu 8:45
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A Hierarchical Training Paradigm for Antibody Structure-sequence Co-design
Fang Wu · Stan Z. Li
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Poster
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Tue 15:15
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PoET: A generative model of protein families as sequences-of-sequences
Timothy Truong Jr · Tristan Bepler
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Workshop
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Inpainting Protein Sequence and Structure with ProtFill
Elizaveta Kozlova · Daniel Nakhaee-Zadeh Gutierrez · Arthur Valentin
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Workshop
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Jointly Embedding Protein Structures and Sequences through Residue Level Alignment
Foster Birnbaum · Saachi Jain · Amy Keating · Aleksander Madry
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Workshop
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Inpainting Protein Sequence and Structure with ProtFill
Elizaveta Kozlova · Arthur Valentin · Daniel Nakhaee-Zadeh Gutierrez
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Workshop
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Sat 12:50
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Contributed talk | AntiFold: Improved antibody structure design using inverse folding
Magnus H Høie · Alissa M Hummer · Tobias Olsen · Morten Nielsen · Charlotte Deane
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Competition
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Fri 6:30
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Causal Structure Learning from Event Sequences and Prior Knowledge
Zhang Keli · Ruichu Cai · Kun Kuang · Lujia Pan · Ye Jian · Jiale Zheng · Mengyue Yang · Marcus Kalander · Dai Quanyu · Liu Yuequn
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Workshop
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Guiding diffusion models for antibody sequence and structure co-design with developability properties
Amelia Villegas-Morcillo · Jana M. Weber · Marcel Reinders
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