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Workshop
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DSMBind: an unsupervised generative modeling framework for binding energy prediction
Wengong Jin · Caroline Uhler · Nir HaCohen
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Workshop
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Parameter-Efficient Fine Tuning of Protein Language Models Improves Prediction of Protein-Protein Interactions
Samuel Sledzieski · Meghana Kshirsagar · Rahul Dodhia · Bonnie Berger · Juan Lavista Ferres
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Workshop
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PiNUI: A Dataset of Protein-Protein Interactions for Machine Learning
Geoffroy Dubourg-Felonneau · Eyal Akiva · Daniel Wesego · Ranjani Varadan
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Poster
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Tue 8:45
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Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model
Shiwei Liu · Tian Zhu · Milong Ren · Chungong Yu · Dongbo Bu · Haicang Zhang
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Workshop
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Pair-EGRET: Enhancing the prediction of protein-protein interaction sites through graph attention networks and protein language models
Ramisa Alam · Sazan Mahbub · Md. Shamsuzzoha Bayzid
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Workshop
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Protein-Protein Docking with Latent Diffusion
Matt McPartlon · Céline Marquet · Tomas Geffner · Daniel Kovtun · Alexander Goncearenco · Zachary Carpenter · Luca Naef · Michael Bronstein · Jinbo Xu
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Workshop
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FAFormer: Frame Averaging Transformer for Predicting Nucleic Acid-Protein Interactions
Tinglin Huang · Zhenqiao Song · Rex Ying · Wengong Jin
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Workshop
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TrustAffinity: accurate, reliable and scalable out-of-distribution protein-ligand binding affinity prediction using trustworthy deep learning
Amitesh Badkul · Li Xie · Shuo Zhang · Lei Xie
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Workshop
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DiffDock-Site: A Novel Paradigm for Enhanced Protein-Ligand Predictions through Binding Site Identification
Huanlei Guo · Song LIU · Mingdi HU · Yilun Lou · Bingyi Jing
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Workshop
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DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
Wei Lu · Jixian Zhang · Huang Weifeng · Ziqiao Zhang · Chengtao Li · Shuangjia Zheng
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Workshop
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DiffDock-Site: A Novel Paradigm for Enhanced Protein-Ligand Predictions through Binding Site Identification
Huanlei Guo · Song LIU · Mingdi HU · Yilun Lou · Bingyi Jing
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Workshop
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Investigating Protein-DNA Binding Energetic of Mismatched DNA
Ruben Solozabal · Tamir Avioz · Yunxiang LI · Le Song · Martin Takac · Ariel Afek
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