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Workshop
SE3Lig: SE(3)-equivariant CNNs for the reconstruction of cofactors and ligands in protein structures
Guillaume Lamoureux · Sid Bhadra-Lobo · Anushriya Subedy · Sagar Khare
Workshop
ESMFold Hallucinates Native-Like Protein Sequences
Jeliazko Jeliazkov · Diego del Alamo · Joel Karpiak
Workshop
Binding Oracle: Fine-Tuning From Stability to Binding Free Energy
Chengyue Gong · Adam Klivans · Jordan Wells · James Loy · Qiang Liu · Alex Dimakis · Daniel Diaz
Affinity Workshop
Mon 13:30 From Sequence to Structure: A Novel GNN-LM Framework for Predicting Protein Secondary Structures
Disha Varshney · Samarth Garg · Sarthak Tyagi · Deeksha Varshney · Nayan Deep
Workshop
Combining Structure and Sequence for Superior Fitness Prediction
Steffanie Paul · Aaron Kollasch · Pascal Notin · Debora Marks
Workshop
Unexplored regions of the protein sequence-structure map revealed at scale by a library of “foldtuned” language models
Arjuna Subramanian · Matt Thomson
Workshop
Fine-tuned protein language models capture T cell receptor stochasticity
Lewis Cornwall · Grisha Szep · James Day · S R Gokul Krishnan · David Carter · Jamie Blundell · Lilly Wollman · Neil Dalchau · Aaron Sim
Workshop
Preferential Bayesian Optimisation for Protein Design with Ranking-Based Fitness Predictors
Alex Hawkins-Hooker · Paul Duckworth · Oliver Bent
Workshop
Inpainting Protein Sequence and Structure with ProtFill
Elizaveta Kozlova · Daniel Nakhaee-Zadeh Gutierrez · Arthur Valentin
Workshop
Protein Inpainting Co-Design with ProtFill
Elizaveta Kozlova · Arthur Valentin · Daniel Nakhaee-Zadeh Gutierrez
Workshop
Offline RL for generative design of protein binders
Denis Tarasov · Ulrich Armel Mbou Sob · Miguel Arbesú · Nima Siboni · Sebastien Boyer · Andries Smit · Oliver Bent · Arnu Pretorius · Marcin Skwark
Workshop
TopoDiff: Improve Protein Backbone Generation with Topology-aware Latent Encoding
Yuyang Zhang · Zinnia Ma · Haipeng Gong