Timezone: »

 
Competition
Multimodal Single-Cell Integration Across Time, Individuals, and Batches
Daniel Burkhardt · Jonathan Bloom · Robrecht Cannoodt · Malte Luecken · Smita Krishnaswamy · Christopher Lance · Angela Pisco · Fabian Theis

Wed Dec 07 05:00 AM -- 08:00 AM (PST) @ Virtual
Event URL: https://www.kaggle.com/competitions/open-problems-multimodal/ »

In this workshop, we will hear presentations from winners and competitors in the Multimodal Single-Cell Integration Challenge. For more information about the competition, see our competition page: https://www.kaggle.com/competitions/open-problems-multimodal/


Schedule - all times UTC
Presentation Name Start Stop Team Name Presenter Name
CCompetition Overview 13:00 13:10 Hosts Daniel Burkhardt
First place winner 13:10 13:30 Shuji Suzuki Shuji Suzuki
Third place winner 13:30 13:50 Makotu makoto hyodo
Fifth place 13:50 14:00 Lucky Shake Jeroen Cerpentier
Second place winner 14:00 14:20 senkin & tmp Jin Zhan
Fourth place 14:20 14:30 Oliver Wang Guoxuan Wang
Seventh place 14:30 14:40 chromosom Yury Shapchyts
Eighth place 14:40 14:50 vialactea Fernando Goncalves
Hosts choice 14:50 15:00 Kha | MT | B | Ambros Ambros Marzetta
Top Shake-up 15:00 15:15 One&Only Tianyu Liu
Top Shake-up 15:15 15:30 DANCE Hongzhi Wen
Hosts choice 15:30 15:45 sB2 Alexander Chervov
Wrap Up 15:45 15:50 Hosts Daniel Burkhardt

Author Information

Daniel Burkhardt (Cellarity)
Jonathan Bloom (Cellarity)
Robrecht Cannoodt (Data Intuitive)
Malte Luecken (Helmholtz Center Munich)

* Computational biologist * Multimodal single-cell data integration challenge organizer * Single-cell data integration * Benchmarking

Smita Krishnaswamy (Yale University)
Christopher Lance (Helmholtz Center Munich)
Angela Pisco
Fabian Theis (Helmholtz Munich)

More from the Same Authors

  • 2021 : A sandbox for prediction and integration of DNA, RNA, and proteins in single cells »
    Malte Luecken · Daniel Burkhardt · Robrecht Cannoodt · Christopher Lance · Aditi Agrawal · Hananeh Aliee · Ann Chen · Louise Deconinck · Angela Detweiler · Alejandro Granados · Shelly Huynh · Laura Isacco · Yang Kim · Dominik Klein · BONY DE KUMAR · Sunil Kuppasani · Heiko Lickert · Aaron McGeever · Honey Mekonen · Joaquin Melgarejo · Maurizio Morri · Michaela Müller · Norma Neff · Sheryl Paul · Bastian Rieck · Kaylie Schneider · Scott Steelman · Michael Sterr · Daniel Treacy · Alexander Tong · Alexandra-Chloe Villani · Guilin Wang · Jia Yan · Ce Zhang · Angela Pisco · Smita Krishnaswamy · Fabian Theis · Jonathan M Bloom
  • 2022 : Topological Jet Tagging »
    Dawson Thomas · Sarah Demers · Smita Krishnaswamy · Bastian Rieck
  • 2022 : Geometric NeuralPDE (GNPnet) Models for Learning Dynamics »
    Oluwadamilola Fasina · Smita Krishnaswamy · Aditi Krishnapriyan
  • 2022 : Modeling Single-Cell Dynamics Using Unbalanced Parameterized Monge Maps »
    Luca Eyring · Dominik Klein · Giovanni Palla · Sören Becker · Philipp Weiler · Niki Kilbertus · Fabian Theis
  • 2022 Spotlight: Lightning Talks 6A-4 »
    Xiu-Shen Wei · Konstantina Dritsa · Guillaume Huguet · ABHRA CHAUDHURI · Zhenbin Wang · Kevin Qinghong Lin · Yutong Chen · Jianan Zhou · Yongsen Mao · Junwei Liang · Jinpeng Wang · Mao Ye · Yiming Zhang · Aikaterini Thoma · H.-Y. Xu · Daniel Sumner Magruder · Enwei Zhang · Jianing Zhu · Ronglai Zuo · Massimiliano Mancini · Hanxiao Jiang · Jun Zhang · Fangyun Wei · Faen Zhang · Ioannis Pavlopoulos · Zeynep Akata · Xiatian Zhu · Jingfeng ZHANG · Alexander Tong · Mattia Soldan · Chunhua Shen · Yuxin Peng · Liuhan Peng · Michael Wray · Tongliang Liu · Anjan Dutta · Yu Wu · Oluwadamilola Fasina · Panos Louridas · Angel Chang · Manik Kuchroo · Manolis Savva · Shujie LIU · Wei Zhou · Rui Yan · Gang Niu · Liang Tian · Bo Han · Eric Z. XU · Guy Wolf · Yingying Zhu · Brian Mak · Difei Gao · Masashi Sugiyama · Smita Krishnaswamy · Rong-Cheng Tu · Wenzhe Zhao · Weijie Kong · Chengfei Cai · WANG HongFa · Dima Damen · Bernard Ghanem · Wei Liu · Mike Zheng Shou
  • 2022 Spotlight: Manifold Interpolating Optimal-Transport Flows for Trajectory Inference »
    Guillaume Huguet · Daniel Sumner Magruder · Alexander Tong · Oluwadamilola Fasina · Manik Kuchroo · Guy Wolf · Smita Krishnaswamy
  • 2022 : Multimodal Single-Cell Integration Across Time and Individuals »
    Daniel Burkhardt · Smita Krishnaswamy · Robrecht Cannoodt · Malte Luecken · Jonathan Bloom · Fabian Theis · Christopher Lance · Angela Pisco
  • 2022 Poster: Diffusion Curvature for Estimating Local Curvature in High Dimensional Data »
    Dhananjay Bhaskar · Kincaid MacDonald · Oluwadamilola Fasina · Dawson Thomas · Bastian Rieck · Ian Adelstein · Smita Krishnaswamy
  • 2022 Poster: Sparsity in Continuous-Depth Neural Networks »
    Hananeh Aliee · Till Richter · Mikhail Solonin · Ignacio Ibarra · Fabian Theis · Niki Kilbertus
  • 2022 Poster: Manifold Interpolating Optimal-Transport Flows for Trajectory Inference »
    Guillaume Huguet · Daniel Sumner Magruder · Alexander Tong · Oluwadamilola Fasina · Manik Kuchroo · Guy Wolf · Smita Krishnaswamy
  • 2022 Poster: Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution »
    Leon Hetzel · Simon Boehm · Niki Kilbertus · Stephan Günnemann · mohammad lotfollahi · Fabian Theis
  • 2021 : Multimodal Single-Cell Data Integration + Q&A »
    Daniel Burkhardt · Smita Krishnaswamy · Malte Luecken · Debora Marks · Angela Pisco · Bastian Rieck · Jian Tang · Alexander Tong · Fabian Theis · Guy Wolf
  • 2020 : Closing Remarks »
    Frederic Chazal · Smita Krishnaswamy · Roland Kwitt · Karthikeyan Natesan Ramamurthy · Bastian Rieck · Yuhei Umeda · Guy Wolf
  • 2020 Workshop: Learning Meaningful Representations of Life (LMRL.org) »
    Elizabeth Wood · Debora Marks · Ray Jones · Adji Bousso Dieng · Alan Aspuru-Guzik · Anshul Kundaje · Barbara Engelhardt · Chang Liu · Edward Boyden · Kresten Lindorff-Larsen · Mor Nitzan · Smita Krishnaswamy · Wouter Boomsma · Yixin Wang · David Van Valen · Orr Ashenberg
  • 2020 Workshop: Topological Data Analysis and Beyond »
    Bastian Rieck · Frederic Chazal · Smita Krishnaswamy · Roland Kwitt · Karthikeyan Natesan Ramamurthy · Yuhei Umeda · Guy Wolf
  • 2020 : Opening Remarks »
    Frederic Chazal · Smita Krishnaswamy · Roland Kwitt · Karthikeyan Natesan Ramamurthy · Bastian Rieck · Yuhei Umeda · Guy Wolf
  • 2020 Poster: Uncovering the Topology of Time-Varying fMRI Data using Cubical Persistence »
    Bastian Rieck · Tristan Yates · Christian Bock · Karsten Borgwardt · Guy Wolf · Nicholas Turk-Browne · Smita Krishnaswamy
  • 2020 Spotlight: Uncovering the Topology of Time-Varying fMRI Data using Cubical Persistence »
    Bastian Rieck · Tristan Yates · Christian Bock · Karsten Borgwardt · Guy Wolf · Nicholas Turk-Browne · Smita Krishnaswamy
  • 2019 : Cell »
    Anne Carpenter · Jian Zhou · Maria Chikina · Alexander Tong · Ben Lengerich · Aly Abdelkareem · Gokcen Eraslan · Stephen Ra · Daniel Burkhardt · Frederick A Matsen IV · Alan Moses · Zhenghao Chen · Marzieh Haghighi · Alex Lu · Geoffrey Schau · Jeff Nivala · Miriam Shiffman · Hannes Harbrecht · Levi Masengo Wa Umba · Joshua Weinstein
  • 2019 : Phenotype »
    Nir HaCohen · David Reshef · Matthew Johnson · Sam Morris · Aurel Nagy · Gokcen Eraslan · Meromit Singer · Eliezer Van Allen · Smita Krishnaswamy · Casey Greene · Scott Linderman · Alexander Wiltschko · Dylan Kotliar · James Zou · Brendan Bulik-Sullivan
  • 2019 Poster: Visualizing the PHATE of Neural Networks »
    Scott Gigante · Adam S Charles · Smita Krishnaswamy · Gal Mishne
  • 2018 Poster: Geometry Based Data Generation »
    Ofir Lindenbaum · Jay Stanley · Guy Wolf · Smita Krishnaswamy
  • 2018 Spotlight: Geometry Based Data Generation »
    Ofir Lindenbaum · Jay Stanley · Guy Wolf · Smita Krishnaswamy