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Invited Talk Session 2
Debora Marks · Olexandr Isayev · Tess Smidt · Nathaniel Thomas

Sat Dec 08 08:00 AM -- 09:00 AM (PST) @

Author Information

Debora Marks (Harvard Medical School)

Debora is a mathematician and computational biologist with a track record of using novel algorithms and statistics to successfully address unsolved biological problems. She has a passion for interpreting genetic variation in a way that impacts biomedical applications. During her PhD, she quantified the pan-genomic scope of microRNA targeting - the combinatorial regulation of protein expression and co-discovered the first microRNA in a virus.  As a postdoc she made a breakthrough in the classic, unsolved problem of ab initio 3D structure prediction of proteins using undirected graphical probability models for evolutionary sequences. She has developed this approach to determine functional interactions, biomolecular structures, including the 3D structure of RNA and RNA-protein complexes and the conformational ensembles of apparently disordered proteins. Her new lab at Harvard is interested in developing methods in deep learning to address a wide range of biological challenges including designing drug affinity libraries for large numbers of human genes, predicting epistasis in antibiotic resistance, the effects of genetic variation on human disease etiology and drug response and sequence design for biosynthetic applications.

Olexandr Isayev (University of North Carolina at Chapel Hill)
Tess Smidt (Berkeley Lab)
Nathaniel Thomas (Stanford University)

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