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Localized Data Fusion for Kernel k-Means Clustering with Application to Cancer Biology
Mehmet Gönen · Adam A Margolin

Mon Dec 08 04:00 PM -- 08:59 PM (PST) @ Level 2, room 210D

In many modern applications from, for example, bioinformatics and computer vision, samples have multiple feature representations coming from different data sources. Multiview learning algorithms try to exploit all these available information to obtain a better learner in such scenarios. In this paper, we propose a novel multiple kernel learning algorithm that extends kernel k-means clustering to the multiview setting, which combines kernels calculated on the views in a localized way to better capture sample-specific characteristics of the data. We demonstrate the better performance of our localized data fusion approach on a human colon and rectal cancer data set by clustering patients. Our method finds more relevant prognostic patient groups than global data fusion methods when we evaluate the results with respect to three commonly used clinical biomarkers.

Author Information

Mehmet Gönen (Oregon Health & Science University)
Adam A Margolin (Oregon Health & Science University)