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Poster

Conditional Independence Testing using Generative Adversarial Networks

Alexis Bellot · Mihaela van der Schaar

East Exhibition Hall B + C #75

Keywords: [ Adversarial Networks; Theory ] [ Applications -> Computational Biology and Bioinformatics; Applications -> Health; Deep Learning ] [ Algorithms ] [ Model Selection and Structure Learning ]


Abstract:

We consider the hypothesis testing problem of detecting conditional dependence, with a focus on high-dimensional feature spaces. Our contribution is a new test statistic based on samples from a generative adversarial network designed to approximate directly a conditional distribution that encodes the null hypothesis, in a manner that maximizes power (the rate of true negatives). We show that such an approach requires only that density approximation be viable in order to ensure that we control type I error (the rate of false positives); in particular, no assumptions need to be made on the form of the distributions or feature dependencies. Using synthetic simulations with high-dimensional data we demonstrate significant gains in power over competing methods. In addition, we illustrate the use of our test to discover causal markers of disease in genetic data.

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